I am currently using Linux Mint (after a long stint of using MX Linux) after learning it handles Nvidia graphics cards flawlessly, which I am grateful for. Whatever grief I have given Ubuntu in the past, I take it back because when they make something work, it is solid.
Anyways, like most distros these days, Flatpaks show up alongside native packages in the package manager / app store. I used to have a bias towards getting the natively packed version, but these days, I am choosing Flatpaks, precisely because I know they will be the latest version.
This includes Blender, Cura, Prusaslicer, and just now QBittorrent. I know this is probably dumb, but I choose the version based on which has the nicer icon.
I do most things via flatpakk by default. It provide an aditional layer of reliability to the apps I use. When somehing goes wrong, with a new update or st like that, it would just break the app rather than my entire system. The sandboxing is definitely a plus when using something like WINE, as a lot of games/apps required a specific version of it. Managing them when they are installed natively is really stressful, since mistake there can break you system as well. All of these Flatpak benefits is doublely important when I recommend Linux to less tech-savy people, i.e. my cousin/mom.
Nevertheless, there are apps that have worse-that-native flatpak version, or required to be native to be full-featured (system configuration, i.e. Dconf).